Package: PMA 1.2-3
PMA: Penalized Multivariate Analysis
Performs Penalized Multivariate Analysis: a penalized matrix decomposition, sparse principal components analysis, and sparse canonical correlation analysis, described in Witten, Tibshirani and Hastie (2009) <doi:10.1093/biostatistics/kxp008> and Witten and Tibshirani (2009) Extensions of sparse canonical correlation analysis, with applications to genomic data <doi:10.2202/1544-6115.1470>.
Authors:
PMA_1.2-3.tar.gz
PMA_1.2-3.zip(r-4.7-x86_64)PMA_1.2-3.zip(r-4.7-arm64)PMA_1.2-3.zip(r-4.6-x86_64)PMA_1.2-3.zip(r-4.6-arm64)PMA_1.2-3.zip(r-4.5-x86_64)
PMA_1.2-3.tgz(r-4.6-x86_64)PMA_1.2-3.tgz(r-4.6-arm64)PMA_1.2-3.tgz(r-4.5-x86_64)PMA_1.2-3.tgz(r-4.5-arm64)
PMA_1.2-3.tar.gz(r-4.7-arm64)PMA_1.2-3.tar.gz(r-4.7-x86_64)PMA_1.2-3.tar.gz(r-4.6-arm64)PMA_1.2-3.tar.gz(r-4.6-x86_64)
PMA_1.2-3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PMA/json (API)
| # Install 'PMA' in R: |
| install.packages('PMA', repos = c('https://bnaras.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bnaras/pma/issues
Last updated from:0d60b40495. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 80 | ||
| linux-devel-x86_64 | OK | 99 | ||
| source / vignettes | OK | 140 | ||
| linux-release-arm64 | OK | 88 | ||
| linux-release-x86_64 | OK | 105 | ||
| macos-release-arm64 | OK | 140 | ||
| macos-release-x86_64 | OK | 304 | ||
| macos-oldrel-arm64 | OK | 77 | ||
| macos-oldrel-x86_64 | OK | 299 | ||
| windows-devel-arm64 | OK | 197 | ||
| windows-devel-x86_64 | OK | 125 | ||
| windows-release-arm64 | OK | 219 | ||
| windows-release-x86_64 | OK | 109 | ||
| windows-oldrel-x86_64 | OK | 104 | ||
| wasm-release | OK | 70 |
Exports:CCACCA.permutedownload_breast_dataMultiCCAMultiCCA.permutePlotCGHPMDPMD.cvSPCSPC.cv
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Penalized Multivariate Analysis | PMA-package PMA |
| Perform sparse canonical correlation analysis using the penalized matrix decomposition. | CCA print.CCA |
| Select tuning parameters for sparse canonical correlation analysis using the penalized matrix decomposition. | CCA.permute |
| Download and return the breast data | download_breast_data |
| Perform sparse multiple canonical correlation analysis. | MultiCCA print.MultiCCA |
| Select tuning parameters for sparse multiple canonical correlation analysis using the penalized matrix decomposition. | MultiCCA.permute plot.MultiCCA.permute print.MultiCCA.permute |
| Plot CGH data | PlotCGH |
| Get a penalized matrix decomposition for a data matrix. | PMD |
| Do tuning parameter selection for PMD via cross-validation | PMD.cv |
| Perform sparse principal component analysis | print.SPC SPC |
| Perform cross-validation on sparse principal component analysis | plot.SPC.cv print.SPC.cv SPC.cv |
